deerlab.dd_randcoil#

dd_randcoil = <deerlab.model.Model object>#

Random-coil model for an unfolded peptide/protein

Parameters:
rarray_like

Distance axis, in nanometers.

Nresscalar

Number of residues.

scalingscalar

Scaling exponent.

lengthscalar

Segment length.

Returns:
Pndarray

Distance distribution.

Notes

Parameter List

Name

Lower

Upper

Type

Frozen

Unit

Description

Nres

2

1e+03

nonlin

No

Number of residues

scaling

0.1

0.4

nonlin

No

nm

Scaling exponent

length

0.33

1

nonlin

No

Segment length

Model




P(r) = \frac{3}{(2\pi\nu_0)^{3/2}}4\pi r^2\exp(-\frac{3 r^2}{\nu_0})

where \nu_0 = 3/(12\pi r_0 N \nu)^{3/2}, and N is the number of residues, R_0 is the segment length, and \nu is the scaling exponent.

Examples

Example of the model evaluated at the start values of the parameters:

(Source code, png, hires.png, pdf)

../_images/deerlab-dd_randcoil-1.png