Examples#
Here is a collection of example scripts for the use of DeerLab.
Basic - Simulations
These are basic examples for performing dipolar EPR simulations in DeerLab.
Basic - Analysis
These are basic examples for routine dipolar EPR analyses in DeerLab.
Analysis of a 4-pulse DEER signal with a compactness penalty
Bootstrapped confidence intervals in routine analysis
Basic analysis of a 4-pulse DEER signal with a bimodal Gaussian model
Distance restraints from 4-pulse DEER data, non-parametric distribution
Intermediate
These are simple examples for performing other dipolar EPR analyses in DeerLab.
Analysis of a 4-pulse DEER signal with multiple dipolar pathways
Analysis of a 6-pulse DQC signal with multiple dipolar pathways
Global fitting of multiple 4-pulse DEER signals, non-parametric distribution
Analysis of a 5-pulse DEER signal with multiple dipolar pathways
Basic analysis of a sparsely sampled 4-pulse DEER signal
Comparing the analysis with and without compactness criterion
Analysing the selection of regularisation parameter
Advanced
These examples showcase deeper usage of DeerLab and the fitting of more complex and custom models.
Simulating polarization effects on low-temperature DEER
Identifiability analysis of a 4-pulse DEER signal via the profile analysis method
Comparing confidence intervals for regularization results
Simulating orientation selection effects in dipolar signals
Fitting Gaussians to a non-parametric distance distribution fit
Global fitting of a two-state model to a series of DEER traces
Analyzing pseudo-titration (dose-response) curves with non-parametric distributions
Global analysis of 5-pulse DEER on a liquid-droplet protein system